Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs71803801 chr13:114163765 C/CTATG 1.14E-11 171 24.17 30.33 3.32 KM Plot
PCPG rs7187944 chr16:88633903 T/G 0.000109 171 25.53 23.53 14.47 KM Plot
PCPG rs71891219 chr17:77361209 GCACA/GCACACA 0.000153 173 20.42 41.48 10.3 KM Plot
PCPG rs7195663 chr16:89596557 G/T 0.000182 177 29.57 25.28 19.53 KM Plot
PCPG rs7199342 chr16:1715454 A/G 4.88E-5 178 25.53 18.2 15.1 KM Plot
PCPG rs71993948 chr10:69614273 CAT/C 0.000422 174 26.92 21.78 13.02 KM Plot
PCPG rs7200097 chr16:1730470 A/G 0 174 25.67 15.85 2.93 KM Plot
PCPG rs7200677 chr16:88633883 G/A 0.000109 171 25.53 23.53 14.47 KM Plot
PCPG rs72006777 chr8:103407716 CACAA/C 0.000327 176 27.6 20.47 25.35 KM Plot
PCPG rs72019658 chr14:74508740 AAAC/A 0.000237 174 25.28 27.43 10.43 KM Plot
PCPG rs7202132 chr16:88656261 G/A 0.000372 175 25.47 24.35 14.47 KM Plot
PCPG rs7203980 chr16:1729233 C/T 0 174 25.6 18.2 2.93 KM Plot
PCPG rs7204819 chr16:1729328 A/G 0 173 25.6 18.75 2.93 KM Plot
PCPG rs7206762 chr16:88636624 T/C 0.000193 172 25.53 24.35 14.47 KM Plot
PCPG rs7207174 chr17:80520222 C/T 4.21E-5 178 25.97 19.72 7.2 KM Plot